Package: epitabulate 0.0.0.9007

Alexander Spina

epitabulate: Tables for Epidemiological Analysis

Produces tables for descriptive epidemiological analysis. These tables describe counts of variables in either line-list or survey data (with appropriate confidence intervals), with additional functionality to calculate odds, risk, and incidence rate ratios directly from a linelist across several variables. This package is part of the 'R4EPIs' project <https://R4epis.netlify.com>.

Authors:Alexander Spina [aut, cre], Zhian N. Kamvar [aut], Amy Gimma [aut], Kate Doyle [ctb]

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epitabulate.pdf |epitabulate.html✨
epitabulate/json (API)
NEWS

# Install 'epitabulate' in R:

install.packages('epitabulate', repos = c('https://r4epi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r4epi/epitabulate/issues

On CRAN:

3.38 score 8 stars 1 packages 3 scripts 14 exports 92 dependencies

Last updated 2 years agofrom:56370b87dd. Checks:OK: 1 ERROR: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 25 2024
R-4.5-win	ERROR	Oct 25 2024
R-4.5-linux	ERROR	Oct 25 2024
R-4.4-win	ERROR	Oct 25 2024
R-4.4-mac	ERROR	Oct 25 2024
R-4.3-win	ERROR	Oct 25 2024
R-4.3-mac	ERROR	Oct 25 2024

Exports:add_ar add_cfr add_crosstabs add_mr attack_rate case_fatality_rate case_fatality_rate_df data_frame_from_2x2 gt_mh_odds gt_remove_stat mortality_rate tab_linelist tab_survey tab_univariate

Dependencies:base64enc bigD binom bitops bslib cachem cards class classInt cli colorspace commonmark cpp11 curl DBI digest dplyr e1071 epikit evaluate fansi farver fastmap fontawesome forcats fs generics ggplot2 glue gt gtable gtsummary highr htmltools htmlwidgets isoband jquerylib jsonlite juicyjuice KernSmooth knitr labeling lattice lifecycle magrittr markdown MASS Matrix memoise mgcv mime minqa mitools munsell nlme numDeriv pillar pkgconfig proxy purrr R6 rappdirs RColorBrewer Rcpp RcppArmadillo reactable reactR rlang rmarkdown s2 sass scales sf srvyr stringi stringr survey survival tibble tidyr tidyselect tinytex units utf8 V8 vctrs viridisLite withr wk xfun xml2 yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A mortality rate wrapper function (using the gtsummary package)that takes a gtsummary object and returns a gtsummary object with attack rate (per given multiple) with 95% confidence interval	add_ar add_cfr add_mr
Rates and Ratios	attack_rate case_fatality_rate case_fatality_rate_df mortality_rate
create a data frame from a 2x2 matrix	data_frame_from_2x2
A gtsummary wrapper function that takes a gtsummary object and removes a column from the table body by column name	add_crosstabs gt_mh_odds gt_remove_stat
Tabulate counts and proportions	tab_linelist tab_survey
Produce odds ratios, risk ratios or incidence rate ratios	tab_univariate