Package: epitabulate 0.1.0

Alexander Spina

epitabulate: Tables for Epidemiological Analysis

Produces tables for descriptive epidemiological analysis. These tables include attack rates, case fatality ratios, and mortality rates (with appropriate confidence intervals), with additional functionality to calculate Mantel-Haenszel odds, risk, and incidence rate ratios. The methods implemented follow standard epidemiological approaches described in Rothman et al. (2008, ISBN:978-0-19-513554-2). This package is part of the 'R4EPIs' project <https://R4EPI.github.io/sitrep/>.

Authors:Alexander Spina [aut, cre], Zhian N. Kamvar [aut], Amy Gimma [aut], Kate Doyle [ctb], Applied Epi Incorporated [cph], Medecins Sans Frontieres Operational Centre Amsterdam [fnd]

epitabulate_0.1.0.tar.gz
epitabulate_0.1.0.zip(r-4.7)epitabulate_0.1.0.zip(r-4.6)epitabulate_0.1.0.zip(r-4.5)
epitabulate_0.1.0.tgz(r-4.6-any)epitabulate_0.1.0.tgz(r-4.5-any)
epitabulate_0.1.0.tar.gz(r-4.7-any)epitabulate_0.1.0.tar.gz(r-4.6-any)
epitabulate_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
epitabulate/json (API)
NEWS

# Install 'epitabulate' in R:

install.packages('epitabulate', repos = c('https://r4epi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r4epi/epitabulate/issues

Pkgdown/docs site:https://r4epi.github.io

On CRAN:

4.98 score 8 stars 1 packages 3 scripts 224 downloads 10 exports 81 dependencies

Last updated from:6f5539d85b. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	250
source / vignettes	OK	231
linux-release-x86_64	OK	199
macos-release-arm64	OK	161
macos-oldrel-arm64	OK	122
windows-devel	OK	145
windows-release	OK	157
windows-oldrel	OK	142
wasm-release	OK	149

Exports:add_ar add_cfr add_crosstabs add_mr attack_rate case_fatality_rate case_fatality_rate_df gt_remove_stat mortality_rate tbl_cmh

Dependencies:base64enc bigD binom bitops bslib cachem cards cardx class classInt cli commonmark cpp11 curl DBI digest dplyr e1071 epikit evaluate farver fastmap fontawesome forcats fs generics ggplot2 glue gt gtable gtsummary highr htmltools htmlwidgets isoband jquerylib jsonlite juicyjuice KernSmooth knitr labeling lifecycle litedown magrittr markdown MASS memoise mime pillar pkgconfig proxy purrr R6 rappdirs RColorBrewer Rcpp reactable reactR rlang rmarkdown s2 S7 sass scales sf stringi stringr tibble tidyr tidyselect tinytex units utf8 V8 vctrs viridisLite withr wk xfun xml2 yaml

Help page	Topics
Add attack rate statistics to a gtsummary table	add_ar
Add case fatality rate (CFR) statistics to a gtsummary table	add_cfr
A {gtsummary} wrapper function that takes a gtsummary univariate regression table and adds appropriate cross tabs by exposure and outcome	add_crosstabs
Add mortality rate statistics to a gtsummary table	add_mr
Rates and Ratios	attack_rate case_fatality_rate case_fatality_rate_df mortality_rate
A gtsummary wrapper function that takes a gtsummary object and removes a column from the table body by column name	gt_remove_stat
A {gtsummary} wrapper function that takes a dataframe and produces crude, stratified and Cochran-Mantel-Haenszel estimates.	tbl_cmh

Package: epitabulate 0.1.0

epitabulate: Tables for Epidemiological Analysis

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)