Package: sitrep 0.4.1

Alexander Spina

sitrep: Report Templates and Helper Functions for Applied Epidemiology

A meta-package that loads the complete sitrep ecosystem for applied epidemiology analysis. This package provides report templates and automatically loads companion packages, including 'epitabulate' (for epidemiological tables), 'epidict' (for data dictionaries), 'epikit' (for epidemiological utilities), and 'apyramid' (for age-sex pyramids). Simply load 'sitrep' to access all functions from the ecosystem.

Authors:Alexander Spina [aut, cre], Zhian N. Kamvar [aut], Dirk Schumacher [aut], Kate Doyle [aut], Chris Jarvis [aut], Lukas Richter [aut], Paula Blomquist [aut], Annick Lenglet [ctb], Neale Batra [ctb], Applied Epi Incorporated [cph], Medecins Sans Frontieres Operational Centre Amsterdam [fnd]

sitrep_0.4.1.tar.gz
sitrep_0.4.1.zip(r-4.7)sitrep_0.4.1.zip(r-4.6)sitrep_0.4.1.zip(r-4.5)
sitrep_0.4.1.tgz(r-4.6-any)sitrep_0.4.1.tgz(r-4.5-any)
sitrep_0.4.1.tar.gz(r-4.7-any)sitrep_0.4.1.tar.gz(r-4.6-any)
sitrep_0.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sitrep/json (API)
NEWS

# Install 'sitrep' in R:
install.packages('sitrep', repos = c('https://r4epi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r4epi/sitrep/issues

Pkgdown/docs site:https://r4epi.github.io

On CRAN:

Conda:

epidemiologymsfoutbreaksreport-generator

8.00 score 45 stars 7 scripts 211 downloads 6 exports 92 dependencies

Last updated from:72c205f0d5. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK200
source / vignettesOK246
linux-release-x86_64OK209
macos-release-arm64OK108
macos-oldrel-arm64OK111
windows-develOK129
windows-releaseOK191
windows-oldrelOK145
wasm-releaseOK175

Exports:available_sitrep_templatescheck_sitrep_templatessitrep_check_depssitrep_conflictssitrep_functionssitrep_install_deps

Dependencies:apyramidbase64encbigDbinombitopsbslibcachemcardscardxcellrangerclassclassIntclicliprcommonmarkcpp11crayoncurlDBIdigestdplyre1071epidictepikitepitabulateevaluatefarverfastmapfontawesomeforcatsfsgenericsggplot2gluegtgtablegtsummaryhighrhmshtmltoolshtmlwidgetsisobandjquerylibjsonlitejuicyjuiceKernSmoothknitrlabelinglifecyclelitedownmagrittrmarkdownMASSmemoisemimepillarpkgconfigprettyunitsprogressproxypurrrR6rappdirsRColorBrewerRcppreactablereactRreadxlrematchrlangrmarkdowns2S7sassscalessfstringistringrtibbletidyrtidyselecttinytexunitsutf8V8vctrsviridisLitewithrwkxfunxml2yaml

Guide: AJS outbreak report

Rendered fromajs_intersectional_outbreak_guide.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-11-18
Started: 2025-09-28

Guide: Cholera outbreak report

Rendered fromcholera_intersectional_outbreak_guide.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-11-18
Started: 2025-09-28

Guide: Diphtheria outbreak report

Rendered fromdiphtheria_intersectional_outbreak_guide.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-11-18
Started: 2025-09-28

Guide: Measles outbreak report

Rendered frommeasles_intersectional_outbreak_guide.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-11-18
Started: 2025-09-28

Guide: Meningitis outbreak report

Rendered frommeningitis_intersectional_outbreak_guide.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-11-18
Started: 2025-09-28

Guide: Intersectional Outbreak Data Recode

Rendered fromintersectional_outbreak_recode_guide.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-11-18
Started: 2025-09-28

Origin Story

Rendered fromBackground.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-12-27
Started: 2022-08-25